Snakemake Report

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Workflow

Click the nodes to obtain details about each step.

If the workflow has been executed in cluster/cloud, runtimes include the waiting time in the queue.

Jobs 1

Input files

Output files

Code

1	`papermill -p cellr_in {params.outdir} -p outdir {params.outdir} -p samples {params.samples} -p sample_names {params.sample_names} {params.rscript} {output[0]}`

Jobs 1

Output files

Code

1	`papermill -p cellr_in {params.indir} -p outdir {params.outdir} -p samples {params.samples} -p sample_names {params.sample_names} {params.rscript} {output[0]}`

Jobs 1

Input files

Output files

Code

1	`papermill -p integrated_f {input} -p outdir {params.outdir} -p sample_names {params.sample_names} -p comps_f {params.comps_f:q} {params.rscript} {output[0]}`

Jobs 1

Input files

Output files

Code

1	`papermill -p integrated_f {input} -p outdir {params.outdir} -p sample_names {params.sample_names} -p comps_f {params.comps_f:q} {params.rscript} {output[0]}`

Jobs 1

Input files

Output files

Code

1	`papermill -p DE.out.path {params.input} -p export.path {params.output} {params.rscript} {output[0]}`